Dataset Uploading
Pandomics allows uploading of a custom gene expression dataset
Version 1.01 supports only normalized gene expression matrix (table) in a coma- or tab-separated format (also referred as csv/tsv). The dataset matrix must contain gene expression in lines and separate sample identifiers as columns (see example below)
The following gene identifiers are allowed
Gene Symbol ID
RefSeq ID
Ensembl Gene ID
UCSC Gene ID
UnoProt ID
Entrez Gene ID
Example data matrix
A metadata file can be associated with a dataset. Metadata annotation can be used for further setup of the sample groups. Below is an example of a metadata table
The first column should always contain sample identifiers that match with the sample IDs of the original dataset matrix
Once the dataset is uploaded, it could be found via Search on the Pandomics Start (home) page